Input
Weight at age in the sea
Cod
young
Cod. Mean weight (kg) at age in the sea.
older
Cod. Mean weight (kg) at age in the sea.
Herring
young
Herring. Mean weight (kg) at age in the sea.
older
Herring. Mean weight (kg) at age in the sea.
Sprat
young
Sprat. Mean weight (kg) at age in the sea.
older
Sprat. Mean weight (kg) at age in the sea.
Catch numbers
Herring
young
Herring. Catch number (thousands) at age.
0lder
Herring. Catch number (thousands) at age.
Sprat
young
Sprat. Catch number (thousands) at age.
0lder
Sprat. Catch number (thousands) at age.
Other predators abundance
Cod
numbers
Cod. Abundance or biomass.
biomass
Cod. Abundance or biomass.
Stomach contents
Cod
2014
Cod. Relative stomach contents weight by predator size class.
2013
Cod. Relative stomach contents weight by predator size class.
2012
Cod. Relative stomach contents weight by predator size class.
2011
Cod. Relative stomach contents weight by predator size class.
2010
Cod. Relative stomach contents weight by predator size class.
2009
Cod. Relative stomach contents weight by predator size class.
2008
Cod. Relative stomach contents weight by predator size class.
2007
Cod. Relative stomach contents weight by predator size class.
2006
Cod. Relative stomach contents weight by predator size class.
2005
Cod. Relative stomach contents weight by predator size class.
2004
Cod. Relative stomach contents weight by predator size class.
2003
Cod. Relative stomach contents weight by predator size class.
2002
Cod. Relative stomach contents weight by predator size class.
2001
Cod. Relative stomach contents weight by predator size class.
2000
Cod. Relative stomach contents weight by predator size class.
1999
Cod. Relative stomach contents weight by predator size class.
1997
Cod. Relative stomach contents weight by predator size class.
1996
Cod. Relative stomach contents weight by predator size class.
1995
Cod. Relative stomach contents weight by predator size class.
1994
Cod. Relative stomach contents weight by predator size class.
1993
Cod. Relative stomach contents weight by predator size class.
1991
Cod. Relative stomach contents weight by predator size class.
1990
Cod. Relative stomach contents weight by predator size class.
1989
Cod. Relative stomach contents weight by predator size class.
1988
Cod. Relative stomach contents weight by predator size class.
1987
Cod. Relative stomach contents weight by predator size class.
1986
Cod. Relative stomach contents weight by predator size class.
1985
Cod. Relative stomach contents weight by predator size class.
1984
Cod. Relative stomach contents weight by predator size class.
1983
Cod. Relative stomach contents weight by predator size class.
1982
Cod. Relative stomach contents weight by predator size class.
1981
Cod. Relative stomach contents weight by predator size class.
1980
Cod. Relative stomach contents weight by predator size class.
1979
Cod. Relative stomach contents weight by predator size class.
1978
Cod. Relative stomach contents weight by predator size class.
1977
Cod. Relative stomach contents weight by predator size class.
1976
Cod. Relative stomach contents weight by predator size class.
1975
Cod. Relative stomach contents weight by predator size class.
1974
Cod. Relative stomach contents weight by predator size class.
Stom. cont. old and new
Cod
2014
Cod. Relative stomach contents weight by predator size class for the two key runs.
2013
Cod. Relative stomach contents weight by predator size class for the two key runs.
2012
Cod. Relative stomach contents weight by predator size class for the two key runs.
2011
Cod. Relative stomach contents weight by predator size class for the two key runs.
2010
Cod. Relative stomach contents weight by predator size class for the two key runs.
2009
Cod. Relative stomach contents weight by predator size class for the two key runs.
2008
Cod. Relative stomach contents weight by predator size class for the two key runs.
2007
Cod. Relative stomach contents weight by predator size class for the two key runs.
2006
Cod. Relative stomach contents weight by predator size class for the two key runs.
2005
Cod. Relative stomach contents weight by predator size class for the two key runs.
2004
Cod. Relative stomach contents weight by predator size class for the two key runs.
2003
Cod. Relative stomach contents weight by predator size class for the two key runs.
2002
Cod. Relative stomach contents weight by predator size class for the two key runs.
2001
Cod. Relative stomach contents weight by predator size class for the two key runs.
2000
Cod. Relative stomach contents weight by predator size class for the two key runs.
1999
Cod. Relative stomach contents weight by predator size class for the two key runs.
1998
Cod. Relative stomach contents weight by predator size class for the two key runs.
1997
Cod. Relative stomach contents weight by predator size class for the two key runs.
1996
Cod. Relative stomach contents weight by predator size class for the two key runs.
1995
Cod. Relative stomach contents weight by predator size class for the two key runs.
1994
Cod. Relative stomach contents weight by predator size class for the two key runs.
1993
Cod. Relative stomach contents weight by predator size class for the two key runs.
1991
Cod. Relative stomach contents weight by predator size class for the two key runs.
1990
Cod. Relative stomach contents weight by predator size class for the two key runs.
1989
Cod. Relative stomach contents weight by predator size class for the two key runs.
1988
Cod. Relative stomach contents weight by predator size class for the two key runs.
1987
Cod. Relative stomach contents weight by predator size class for the two key runs.
1986
Cod. Relative stomach contents weight by predator size class for the two key runs.
1985
Cod. Relative stomach contents weight by predator size class for the two key runs.
1984
Cod. Relative stomach contents weight by predator size class for the two key runs.
1983
Cod. Relative stomach contents weight by predator size class for the two key runs.
1982
Cod. Relative stomach contents weight by predator size class for the two key runs.
1981
Cod. Relative stomach contents weight by predator size class for the two key runs.
1980
Cod. Relative stomach contents weight by predator size class for the two key runs.
1979
Cod. Relative stomach contents weight by predator size class for the two key runs.
1978
Cod. Relative stomach contents weight by predator size class for the two key runs.
1977
Cod. Relative stomach contents weight by predator size class for the two key runs.
1976
Cod. Relative stomach contents weight by predator size class for the two key runs.
1975
Cod. Relative stomach contents weight by predator size class for the two key runs.
1974
Cod. Relative stomach contents weight by predator size class for the two key runs.
Parameters
F, Year effect
Year effect in separable model for F. Years without uncertainty values have the (input) value 1, or catches are missing from that year.
N first year
Stock number (N) at age in the first year.
N first age
Recruitment, N at the first age.
Survey catchability
Herring
Herring. Survey catchabiliy by fleet. Ages shown with no error bar have the same catchability and error bar as the previous age.
Sprat
Sprat. Survey catchabiliy by fleet. Ages shown with no error bar have the same catchability and error bar as the previous age.
Survey obs. s2
Herring
Herring. Survey observation variance by fleet. Ages shown with no error bar have the same variance and error bar as the previous age.
Sprat
Sprat. Survey observation variance by fleet. Ages shown with no error bar have the same variance and error bar as the previous age.
Output
Stock summary
Herring
Herring. Catch weight, Recruitment, F, SSB, Biomass removed due to fishery (F), predation by SMS species (M2) and residual natural mortality (M1). The predation mortality (M2) presented by the 0-group (black solid line) is for the second half of the year. The M2 for the rest of the ages are annual values.
Sprat
Sprat. Catch weight, Recruitment, F, SSB, Biomass removed due to fishery (F), predation by SMS species (M2) and residual natural mortality (M1). The predation mortality (M2) presented by the 0-group (black solid line) is for the second half of the year. The M2 for the rest of the ages are annual values.
Predation mortality (M2)
Annual M2.
Herring
Herring. Annual predation mortality (sum of quarterly M2)
Sprat
Sprat. Annual predation mortality (sum of quarterly M2)
Quarterly M2.
Herring
Q:1
Herring. Quarterly predation mortality (M2)
Q:2
Herring. Quarterly predation mortality (M2)
Q:3
Herring. Quarterly predation mortality (M2)
Q:4
Herring. Quarterly predation mortality (M2)
Sprat
Q:1
Sprat. Quarterly predation mortality (M2)
Q:2
Sprat. Quarterly predation mortality (M2)
Q:3
Sprat. Quarterly predation mortality (M2)
Q:4
Sprat. Quarterly predation mortality (M2)
Size selection
by predator
Cod size selection, Observed and estimated.
by predator and prey
Cod size selection by prey, Observed and estimated.
M (M1+M2) smoothed
Herring
Herring. Annual natural mortalities (M) values smoothed (sum of quarterly M1+M2)
Sprat
Sprat. Annual natural mortalities (M) values smoothed (sum of quarterly M1+M2)
Who eats whom
All preys eaten by predator
Biomass of all preys eaten by predator
Preys eaten by all predator
Biomass eaten by prey
Preys eaten by predator
Herring
Herring. Who eats this prey.
Sprat
Sprat. Who eats this prey.
Exploitation pattern
Herring
Herring. Exploitation pattern, scaled to Fbar.
Sprat
Sprat. Exploitation pattern, scaled to Fbar.
Uncertanties
SSB
Uncertanties (1 sd / value) of Spawning stock biomass.
Recruit
Uncertanties (1 sd / value) of Recruitment.
mean F
Uncertanties (1 sd / value) of mean F.
Diagnostics
Residuals
Catch residuals
Herring
Herring. Catch observations Residuals, log(Survey observed CPUE) - log(expected CPUE). Red is positive, White is negative. Q:9 means annual data.
Sprat
Sprat. Catch observations Residuals, log(Survey observed CPUE) - log(expected CPUE). Red is positive, White is negative. Q:9 means annual data.
Survey residuals
Herring
Herring. Survey observations Residuals, log(Survey observed CPUE) - log(expected CPUE). Red is positive, White is negative.
Sprat
Sprat. Survey observations Residuals, log(Survey observed CPUE) - log(expected CPUE). Red is positive, White is negative.
Stomach residuals (Raw)
Cod
QQ plot
Cod. Stomach observation residuals (raw = (observed proportion) - (expected proportion)). For residual plots, White is positive, green is negative.
by year quarter
Cod. Stomach observation residuals (raw = (observed proportion) - (expected proportion)). For residual plots, White is positive, green is negative.
by quarter year
Cod. Stomach observation residuals (raw = (observed proportion) - (expected proportion)). For residual plots, White is positive, green is negative.
box plots
Cod. Stomach observation residuals (raw = (observed proportion) - (expected proportion)). For residual plots, White is positive, green is negative.
Stomach residuals (Standardised)
Cod
QQ plot
Cod. Stomach observation residuals (Standardised = (observed-expected)/sd(expected)). For residual plots, White is positive, green is negative.
by year quarter
Cod. Stomach observation residuals (Standardised = (observed-expected)/sd(expected)). For residual plots, White is positive, green is negative.
by quarter year
Cod. Stomach observation residuals (Standardised = (observed-expected)/sd(expected)). For residual plots, White is positive, green is negative.
Stomach resid. (compResidual)
Cod
QQ plot
Cod. Stomach observation residuals (Residual calculation for compositional observations, see R Package compResidual). For residual plots, White is positive, green is negative.
by year quarter
Cod. Stomach observation residuals (Residual calculation for compositional observations, see R Package compResidual). For residual plots, White is positive, green is negative.
by quarter year
Cod. Stomach observation residuals (Residual calculation for compositional observations, see R Package compResidual). For residual plots, White is positive, green is negative.
Retrospective analysis
Retro. summary
Herring
Herring. Model retrospective analysis.
Sprat
Sprat. Model retrospective analysis.
Retro. M2
Herring
Herring. Model retrospective analysis of M2.
Sprat
Sprat. Model retrospective analysis of M2.
Stomach contents
Cod
2014
Cod. Observed and estimated stomach contents weight by predator size class.
2013
Cod. Observed and estimated stomach contents weight by predator size class.
2012
Cod. Observed and estimated stomach contents weight by predator size class.
2011
Cod. Observed and estimated stomach contents weight by predator size class.
2010
Cod. Observed and estimated stomach contents weight by predator size class.
2009
Cod. Observed and estimated stomach contents weight by predator size class.
2008
Cod. Observed and estimated stomach contents weight by predator size class.
2007
Cod. Observed and estimated stomach contents weight by predator size class.
2006
Cod. Observed and estimated stomach contents weight by predator size class.
2005
Cod. Observed and estimated stomach contents weight by predator size class.
2004
Cod. Observed and estimated stomach contents weight by predator size class.
2003
Cod. Observed and estimated stomach contents weight by predator size class.
2002
Cod. Observed and estimated stomach contents weight by predator size class.
2001
Cod. Observed and estimated stomach contents weight by predator size class.
2000
Cod. Observed and estimated stomach contents weight by predator size class.
1999
Cod. Observed and estimated stomach contents weight by predator size class.
1997
Cod. Observed and estimated stomach contents weight by predator size class.
1996
Cod. Observed and estimated stomach contents weight by predator size class.
1995
Cod. Observed and estimated stomach contents weight by predator size class.
1994
Cod. Observed and estimated stomach contents weight by predator size class.
1993
Cod. Observed and estimated stomach contents weight by predator size class.
1991
Cod. Observed and estimated stomach contents weight by predator size class.
1990
Cod. Observed and estimated stomach contents weight by predator size class.
1989
Cod. Observed and estimated stomach contents weight by predator size class.
1988
Cod. Observed and estimated stomach contents weight by predator size class.
1987
Cod. Observed and estimated stomach contents weight by predator size class.
1986
Cod. Observed and estimated stomach contents weight by predator size class.
1985
Cod. Observed and estimated stomach contents weight by predator size class.
1984
Cod. Observed and estimated stomach contents weight by predator size class.
1983
Cod. Observed and estimated stomach contents weight by predator size class.
1982
Cod. Observed and estimated stomach contents weight by predator size class.
1981
Cod. Observed and estimated stomach contents weight by predator size class.
1980
Cod. Observed and estimated stomach contents weight by predator size class.
1979
Cod. Observed and estimated stomach contents weight by predator size class.
1978
Cod. Observed and estimated stomach contents weight by predator size class.
1977
Cod. Observed and estimated stomach contents weight by predator size class.
1976
Cod. Observed and estimated stomach contents weight by predator size class.
1975
Cod. Observed and estimated stomach contents weight by predator size class.
1974
Cod. Observed and estimated stomach contents weight by predator size class.
Comparison, key-runs
Key-runs, summary
Herring
Herring. Stock summary.
Sprat
Sprat. Stock summary.
Key-runs M2
Herring
Herring. M2.
Sprat
Sprat. M2.
Key-runs SSB/R
Herring
Herring. Stock-recruitment. Values of SSB and recruits, and fitted stock recruitment relation (median, mean, +-1SD, +-2 SD). “Red” values are not used in the fit
Sprat
Sprat. Stock-recruitment. Values of SSB and recruits, and fitted stock recruitment relation (median, mean, +-1SD, +-2 SD). “Red” values are not used in the fit